TorBUG meets on the last Wednesday of every month from September through April. Research presentations by bioinformatics leaders, students and industry representatives are followed by networking over pizza and refreshments.
Meetings are held in the Red Room at the Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street at 4:00 pm and are free and open to all.
|3:00pm – 4:00pm||By Request Only - Trainees meet with Speaker (Black Room, Terrence Donnelly Centre). Contact email@example.com to arrange a meeting with the guest speaker|
|4:00pm – 4:15pm||Trainee Presentation (Red Room, Terrence Donnelly Centre)|
|4:15pm – 5:00pm||Speaker Presentation (Red Room, Terrence Donnelly Centre)|
|5:00pm – 7:00pm||Pizza and Beverage Session with Speaker and Bioinformatics community (Red Room, Terrence Donnelly Centre)|
Next Talk: March 25, 2015
3:00-4:00 - If you would like the opportunity to have a 'fireside' chat with Nicholas Provart, please contact us at firstname.lastname@example.org. Discussions will be arranged between 3:00-4:00pm in CCBR Black Room
4:00-5:00 - Main Event in CCBR Red Room
Trainee Speaker: Dr. Mohammed Uddin, Scherer Lab, TCAG
Talk Title: Integrated Genomic Approach to Identify Genes Associated with Developmental Delay
Guest Speaker: Dr. Nicholas Provart, University of Toronto
Talk Title: Raising the BAR for Integrative Biological Data Visualization Tools for Hypothesis Generation in Research and Education
Abstract: We have developed tools, available as part of the Bio-Analytic Resource at http://bar.utoronto.ca, for visualizing large data sets, to allow deeper insights into biological questions. These web-based tools permit easy exploration of data sets of a single type, such as gene expression compendia, protein-protein interaction networks, or cis-regulatory elements. We are also developing tools that facilitate the visualization and integration of data from different biological scales, such as variation data at the kilometer scale, through expression data at the cm or finer scale, down to protein structure data at the nanometer scale. With these tools it is possible to ask the question “on which part of the protein structure does this particular non-synonymous change occur?” or “where are these genes, whose gene products interact, expressed?” Our experience with developing these tools as “apps” for other international cyberinfrastructure assets will also be presented. I’ll discuss the development of two hands-on introductory bioinformatic lab courses, Bioinformatic Methods I and II, currently running on Coursera.org.
Upcoming Speakers in 2014/2015:
September 24, 2014 – Sandrine Dudoit
October 29, 2014 – Heng Li
November 26, 2014 – Mads Kaern
January 28, 2015 – Anna Goldenberg
February 25, 2015 – Benjamin Haibe-Kains
March 25, 2015 – Nicholas Provart
April 29, 2015 – Paul Flicek
- Watch our past presentations on YouTube
Wednesday September 24, 2012
Speaker: Lincoln Stein, Director of Informatics and Bio-computing at the Ontario Institute for Cancer Research.
YouTube Presentation: modENCODE: The Good, the Bad and the "Uggh"
Short Presentation: Marc Fiume, PhD Candidate in Computer Science, Brudno Lab, University of Toronto.
YouTube Presentation: Next-generation genome browsing
Wednesday October 31, 2012
Speaker: Brian O'Connor
YouTube Presentation: Hack a What? Doing bioinformatics the Hack-a-thon Way
Speaker: Robin Haw
YouTube Presentation: Google Summer of Code: Bringing Google to Bioinformatics
Short Presentation: Yue Dong
YouTube Presentation: My Experience in the Google world
Speaker: Jean Lozach, Senior Scientist at Illumina Bioinformatics.
YouTube Presentation: BASE Space: Open Tools in the Cloud
Wednesday November 28, 2012
Speaker: Lars Jorgensen, Director of Genome Informatics, Personalized Genomics & Innovative Medicine at Mount Sinai Hospital.
Title: Bioinformatics in a Clinical Setting
Short Presentation: Omar Wagih, Masters Student in Computer Science, Bader Lab, University of Toronto
Title: SGATools: tools for image analysis, normalization and scoring SGA screens
Wednesday January 30, 2013
Speaker: Michael Brudno, Director, Centre for Computational Medicine, Hospital for Sick Children & Associate Professor, University of Toronto.
Title: Analyzing and Visualizing High Throughput Sequencing Data
Short Presentation: Leopold Parts, Research Associate, Boone & Andrews Labs, University of Toronto
Title: How come I have my father's nose? Quantitative genetics of protein traits.
Wednesday February 27, 2013
Speaker: Fritz Roth, Senior Scientist, Samuel Lunenfeld Research Institute and Canada Research Chair in Integrative Biology.
Title: 1) Pointing to causal genes on a prix fixe GWAS menu, and 2) protein network mapping via wild sex and sequencing
Short Presentation: Juri Reimand, Postdoctoral Fellow in Bader Lab, University of Toronto
Title: Chasing cancer drivers in cell signalling networks
Wednesday March 27, 2013
Speaker: Sara Diamond, President and Vice-Chancellor, OCAD University.
Title: Information and Scientific Visualization: Experiments in Aesthetics, Meaning and Process
Short Presentation: Jamie Waese, PhD Candidate, Department of Cell & Systems Biology, University of Toronto
Title: Building Data Visualization Tools for Large Biological Data Sets
Wednesday April 24, 2013, 4:00pm
Speaker: Dr. Wyeth Wasserman, Professor of Medical Genetics, Senior Scientist and Co-Director at CMMT at the University of British Columbia.
Title: Discovery of Regulatory Variations in Whole Genome Sequences
Short Presentation: Dr. Nuno Barbosa-Morais, Senior Postdoctoral Fellow, University of Toronto
Title: Studying the evolution of tissue-specific alternative splicing using RNA-Seq data
Wednesday September 25, 2013
Speaker: Brian Shoichet, Professor at Leslie Dan Faculty of Pharmacy, University of Toronto.
Title: The Metabolic Code
Short Presentation: Maria Safi, PhD Candidate, University of Toronto
Title: Efficient a priori modeling of drug resistance: structural models
Wednesday October 30, 2013
Speaker: Paul Boutros, Principal Investigator, Informatics and Bio-computing, OICR.
YouTube Presentation: World War B: Making Benchmarking Exciting
Short Presentation: Carl de Boer, PhD Candidate, University of Toronto
YouTube Presentation: Poly-dA:dT tracts form a directional nucleosomal turnstile in vivo
November 27, 2013
Speaker: Michael Hoffman, Princess Margaret Cancer Centre
YouTube Presentation: Semi-automated annotation of the human genome using chromatin and RNA-seq data
Short Presentation: Sarah Gagliano, Joanne Knight lab at CAMH
YouTube Presentation: A method to incorporate hundreds of functional characteristics with association evidence to improve SNP prioritization
January 29, 2014
Guest Speaker: Jared Simpson, Ontario Institute for Cancer Research
YouTube Presentation: Designing scalable algorithms for sequence analysis
Short Presentation: Lee Zamparo, Zhang Lab at University of Toronto
YouTube Presentation: Dimensionality reduction for high-content screening data
February 26, 2014
Guest Speaker: Guillaume Bourque, McGill University and Genome Quebec Innovation Center
Title: Mapping the functional elements in the human genome
Short Presentation: Oren Kraus, Frey Lab at University of Toronto
YouTube Presentation: Outlier Detection for High-Content Cell Screening
March 26, 2014
Guest Speaker: Michael Lawrence, Genentech
Title:Scalable and Integrative Genomics with R/Bioconductor
Short Presentation: David Shih, Taylor Lab at Sick Kids
YouTube Presentation: Investigating the molecular subgroups of medulloblastoma: means, motive and opportunity
April 30, 2014
Guest Speaker: Titus Brown, Michigan State University
YouTube Presentation: Building khmer, a platform for research in scalable sequence analysis
Short Presentation: Julio Diaz Caballero, David Guttman's lab at University of Toronto
YouTube Presentation: Periodic Selection Drives Pseudomonas aeruginosa Diversity in the Cystic Fibrosis Lung
September 24, 2014
Guest Speaker: Sandrine Dudoit, University of California Berkeley
YouTube Presentation: Normalization and Differential Expression in RNA-Seq
Short Presentation: Joseph O'Neill, University of Guelph
YouTube Presentation: Multi-locus GWAS analysis/genomic selection as a "clique" problem solved through evolutionary computation
October 29, 2014
Guest Speaker: Dr. Heng Li, Broad Institute
Title: Experimenting FM-index for multiple human samples
Short Presentation: Ladislav Rampasek, University of Toronto
Title: Probabilistic Method for Detecting Copy Number Variation in a Fetal Genome Using Maternal Plasma Sequencing
November 26, 2014
Guest Speaker: Dr. Mads Kaern, University of Ottawa
Title: Evidence for non-genetic causes of eukaryotic drug resistance
Short Presentation: David Kim, Cowen Lab, University of Toronto
Title: Investigating the Fungal Microbiome of Cystic Fibrosis Patient Lungs
January 28, 2015
Guest Speaker: Dr. Anna Goldenberg, University of Toronto
Title: Patient network-based framework for data integration in complex human diseases
Short Presentation: Amit Deshwar, Morris Lab, University of Toronto
Title: Reconstructing the evolutionary history of tumours
February 25, 2015
Guest Speaker: Dr. Benjamin Haibe-Kains, Princess Margaret Bioinformatics and Computational Genomics Laboratory
Title: Biomarker Discovery Using In Vitro Drug Sensitivity: The Good, the Bad and the Ugly
Short Presentation: Sunny Yu Liu, Wrana Lab, University of Toronto
Title: Translational bioinformatics: the key to precision medicine